Research Articles

1. Xin M*, Yang R*, Li G, Chen H, Laurie J, Ma C, Wang D, Yao Y, Larkins BA, Sun Q, Yadegari R, Wang X, Ni Z. (2013) Dynamic Expression of Imprinted Genes Associates with Maternally Controlled Nutrient Allocation during Maize Endosperm Development. The Plant Cell. Sep 20. [Epub ahead of print]. (*: equal contribution)

2. Yang R*, Jarvis DE*, Chen H, Beilstein MA, Grimwood J, Jenkins J, Shu S, Prochnik S, Xin M, Ma C, Schmutz J, Wing RA, Mitchell-Olds T, Schumaker KS, Wang X. (2013) The Reference Genome of the Halophytic Plant Eutrema salsugineum. Frontiers Plant Sciences. 4: 46. (*: equal contribution)

3. Yang R, Wang X. (2013) Organ evolution in angiosperms driven by correlated divergences of gene sequences and expression patterns. The Plant Cell. 25 (1): 71-82.

4. Ma C, Chen H, Xin M, Yang R, Wang X. (2012) KGBassembler: a karyotype-based genome assembler for Brassicaceae species. Bioinformatics. 1; 28 (23): 3141-3.

5. Yang R, Dai Z, Chen S, Chen L. (2011) MicroRNA-mediated gene regulation plays a minor role in the transcriptomic plasticity of cold-acclimated zebrafish brain tissue. BMC Genomics. 12: 605.

6. Yang R, Su B. (2010) Characterization and comparison of the tissue-related modules in human and mouse. PLoS ONE. 22;5 (7): e11730.

7. Han L*, Yang R*, Su B, Zhao Z. (2008) An SVM-based algorithm for classifying promoter-associated CpG islands in the human and mouse genomes. Lecture Notes in Artificial Intelligence (LNAI). 5227: 975-81. (*: equal contribution)

8. Yang R, Kong J, Wu X, Deng Z, Chen Q, Liu W. (2005) Application of ISSR markers in genetic polymorphism of Capsicum frutescens L. Journal of Shanghai University (Natural Science). 11: 423-6

9. Yang R, Liu J, Lu X, Wang X. (2001) Micro- and ultrastructural changes of wheat leaf cells induced by powdery mildew infection. Acta Botanica Boreali-Occidentalia Sinica. 21: 293-6

10. Xin M*, Yang R*, Yao Y, Ma C, Peng H, Sun Q, Wang X, Ni Z. (2014) Dynamic parent-of-origin effects on small interfering RNA expression in the developing maize endosperm. BMC Plant Biology. 14(1):192. (*: equal contribution)

11. Li G*, Wang D*, Yang R*, Logan K, Chen H, Zhang S, Skaggs MI, Lloyd A, Burnett WJ, Laurie JD, Hunter BG, Dannenhoffer JM, Larkins BA, Drews GN, Wang X, Yadegari R. (2013) Temporal patterns of gene expression in developing maize endosperm identified through transcriptome sequencing. PNAS. 111(21):7582-7. (*: equal contribution)

12. Thakare D, Yang R, Steffen JG, Zhan J, Wang D, Clark RM, Wang X, Yadegari R. (2014) RNA-Seq analysis of laser-capture microdissected cells of the developing central starchy endosperm of maize. Genomics Data. 2: 242-5

 

 

Review articles

1. Yang R, Su B. (2009) Modular organization in a cell: concepts and applications. Current Bioinformatics. 4: 207-217

 

 

Articles in Revision or Preparation

1. Yang R, Chen H, Wang X. Distinct dynamics of transposable elements in the genome evolution of salt-tolerant and salt-sensitive Brassicaceae species.